PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G21360.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 335aa    MW: 36602.4 Da    PI: 7.2318
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G21360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.41.2e-52241541128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      lppGfrFhPtdeelv++yL++kv +  +    v i+evd++++ePw+Lp++++ +ekewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+
  OGLUM08G21360.1  24 LPPGFRFHPTDEELVTFYLAAKVFNGACCG-GVdIAEVDLNRCEPWELPEAARMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVV 116
                      79*************************888.455***************9888999************************************** PP

              NAM  94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++   +g+l+g+kktLvfykgrap+gekt+Wv+heyrl
  OGLUM08G21360.1 117 AAaaaGGALIGMKKTLVFYKGRAPRGEKTKWVLHEYRL 154
                      998888999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-6316177IPR003441NAC domain
PROSITE profilePS5100559.13524177IPR003441NAC domain
PfamPF023653.7E-2725154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGDALWEMLG EEMAAAAAAG EHGLPPGFRF HPTDEELVTF YLAAKVFNGA CCGGVDIAEV  60
DLNRCEPWEL PEAARMGEKE WYFFSLRDRK YPTGLRTNRA TGAGYWKATG KDREVVAAAA  120
AGGALIGMKK TLVFYKGRAP RGEKTKWVLH EYRLDGDFAA ARRSTKEEWV ICRIFHKVGD  180
QYSKLMMMKS PASYYLPVSH HHPSSIFHDL PPVPFPNPSL VPFHHDLPTS FHPPLLQHSH  240
ANSKNSSSNN GGFVFPNEPN TTNSSDNHIS CNGAMAAAFP SFSCASTVTG KGGPPAQLGV  300
NAGQQEPPPP TWMDAYLQHS GFIYEMGPPA VPRGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-492117717168NAC domain-containing protein 19
3swm_B4e-492117717168NAC domain-containing protein 19
3swm_C4e-492117717168NAC domain-containing protein 19
3swm_D4e-492117717168NAC domain-containing protein 19
3swp_A4e-492117717168NAC domain-containing protein 19
3swp_B4e-492117717168NAC domain-containing protein 19
3swp_C4e-492117717168NAC domain-containing protein 19
3swp_D4e-492117717168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060490.0AP006049.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648828.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8516e-87NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A0E0AXI90.0A0A0E0AXI9_9ORYZ; Uncharacterized protein
STRINGORGLA08G0177600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112373341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.14e-82NAC family protein